Dbfetch
LOCUS NM_179491 2456 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana cationic amino acid transporter 2 (CAT2), mRNA. ACCESSION NM_179491 VERSION NM_179491.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2456) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 2456) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2456) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2456) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 2456) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_179491.2. FEATURES Location/Qualifiers source 1..2456 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..2456 /gene="CAT2" /locus_tag="AT1G58030" /gene_synonym="cationic amino acid transporter 2" /note="Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast." /db_xref="Araport:AT1G58030" /db_xref="GeneID:842170" /db_xref="TAIR:AT1G58030" CDS 365..2272 /gene="CAT2" /locus_tag="AT1G58030" /gene_synonym="cationic amino acid transporter 2" /inference="Similar to RNA sequence, EST:INSD:BP565251.1,INSD:T46348.1,INSD:AV787527.1, INSD:EL276742.1,INSD:BP623507.1,INSD:ES099575.1, INSD:EL085405.1,INSD:DR277068.1,INSD:EH807871.1, INSD:BP832583.1,INSD:BE526120.1,INSD:H76528.1, INSD:EG439260.1,INSD:ES035373.1,INSD:EG516068.1, INSD:BP621254.1,INSD:DR380473.1,INSD:BP613922.1, INSD:BP810280.1,INSD:BP807143.1,INSD:BP603474.1, INSD:EG440315.1,INSD:AV532976.1,INSD:ES100498.1, INSD:BP632596.1,INSD:BP605308.1,INSD:EH873184.1, INSD:AV533072.1,INSD:ES028178.1,INSD:ES088447.1, INSD:EL048907.1,INSD:AV533073.1,INSD:ES015993.1, INSD:EH994250.1,INSD:AV801102.1,INSD:T46715.1, INSD:AV814267.1,INSD:BP784836.1,INSD:ES182356.1, INSD:BP807185.1,INSD:BP620919.1,INSD:EH826534.1, INSD:DR277065.1,INSD:EL170557.1,INSD:BP612119.1, INSD:BP606055.1,INSD:BP608800.1,INSD:ES144049.1, INSD:EL317206.1,INSD:ES000632.1,INSD:EH989301.1, INSD:EH868405.1,INSD:EL221374.1,INSD:AV810904.1, INSD:ES139069.1,INSD:EL278345.1,INSD:AV808251.1, INSD:EL254835.1,INSD:EL236297.1,INSD:N96284.1, INSD:BP574565.1,INSD:EH828460.1,INSD:AV827169.1, INSD:EL158617.1,INSD:BP806121.1,INSD:BP618555.1, INSD:W43431.1,INSD:EL971305.1,INSD:DR277069.1, INSD:EH990789.1,INSD:ES100039.1,INSD:EL045516.1, INSD:ES057372.1,INSD:AV832226.1,INSD:BP572183.1, INSD:AV801628.1,INSD:EG440314.1,INSD:T46716.1, INSD:EH948189.1,INSD:BP660058.1,INSD:BP621425.1, INSD:EL230205.1,INSD:AV797424.1,INSD:BP615730.1, INSD:BP619057.1,INSD:EH891035.1,INSD:BP628201.1, INSD:ES040348.1,INSD:BP601776.1,INSD:EH862272.1, INSD:EH875718.1,INSD:EL107093.1,INSD:BP809665.1, INSD:BP620843.1,INSD:EH975219.1,INSD:ES087807.1, INSD:DR277067.1,INSD:BP806754.1,INSD:BP563663.1, INSD:ES000743.1,INSD:DR277066.1,INSD:BP620298.1, INSD:T46722.1,INSD:BP600390.1,INSD:EH943313.1, INSD:BP620487.1,INSD:EL180645.1,INSD:EL080618.1, INSD:BP564208.1,INSD:BP600750.1,INSD:EL257172.1, INSD:EH840901.1,INSD:ES089371.1,INSD:ES133467.1" /inference="similar to RNA sequence, mRNA:INSD:BT000457.1,INSD:AF367304.1,INSD:BT046174.1" /note="cationic amino acid transporter 2 (CAT2); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 3 (TAIR:AT5G36940.1); Has 37076 Blast hits to 34712 proteins in 2307 species: Archae - 552; Bacteria - 29543; Metazoa - 2357; Fungi - 2838; Plants - 508; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink)." /codon_start=1 /product="cationic amino acid transporter 2" /protein_id="NP_849822.1" /db_xref="Araport:AT1G58030" /db_xref="GeneID:842170" /db_xref="TAIR:AT1G58030" /translation="MGFLVDTQKEGGGHSWGYVRSLVRRKQVDSANGQSHGHQLARAL TVPHLVAIGVGATIGAGVYILVGTVAREHSGPSLALSFLIAGIAAGLSAFCYAELSSR CPSAGSAYHYSYICVGEGVAWIIGWALILEYTIGGSAVARGISPNLALIFGGEDGLPA ILARHQIPGLDIVVDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVCVLLFVIVAG SYLGFKTGWPGYELPTGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVRNPQRDLP IGIGLALLLCCSLYMMVSIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLITLGAVM ALCSALMGALLPQPRILMAMARDGLLPSIFSDINKRTQVPVKATVATGLCAATLAFFM DVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEQPLPSSLQERIDSVSFICGETTSS GHVGTSDSSHQPLIVNNDALVDVPLIKNQEALGCLVLSEETRRIVAGWSIMFTCVGAF LLSYAASSLSFPGLIRYPLCGVGGCLLLAGLIALSSIDQDDARHTFGHSGGYMCPFVP LLPIICILINMYLLVNLGSATWARVSVWLLIGVIVYVFYGRKNSSLANAVYVTTAHAE EIYREHEGSLA" ORIGIN 1 ttgtcagtgg ctcgttttct cacgctacaa taatttctct tctttcctaa attttaaatc 61 attttcttca tctttctact tcattacgca aacacaagtc cttgtccttc cttcctcaat 121 caaacaacac cttctttaat ccagaacaaa aaaaaacaaa cagaagaaaa aaaaaaaaaa 181 aaactacaaa aaaaaaatct ctgcccgctt ctccgttctc ggggttgcgt caaaattgca 241 ccaaattaat caaaacctac ccagaaatca tttttggtca caggggatag gcgggcagat 301 ttaaattttc ttcttttgtt cttctgtttg aatttgtatt gattcgtgaa attgtgtttg 361 tttgatgggg tttttggtgg atacgcaaaa ggaaggaggt ggacattcat ggggttacgt 421 tagaagtttg gttagaagga aacaagtcga ctctgctaat ggccaatctc atggtcacca 481 acttgctaga gccctcactg ttcctcatct cgttgcaatt ggtgttggag caacaatagg 541 agctggagtt tatattcttg taggaacagt tgcgagagag cattcaggac cttctcttgc 601 tttgtctttt cttattgctg gaattgctgc tggtctttct gcgttttgtt atgctgaact 661 ctctagtcgt tgcccttcag ctgggagtgc gtatcactat tcttacattt gtgttggtga 721 aggtgttgcg tggataatcg gttgggcgtt gattctggag tataccattg gtggctcagc 781 tgttgcccgt ggcatatccc ctaatctggc actgattttt ggtggtgaag atggtttgcc 841 tgcaatttta gcgcgccacc agatcccagg ccttgatatt gttgttgatc catgtgctgc 901 tattcttgtg tttgttgtaa ctggcctttt gtgcatggga ataaaggaga gcacatttgc 961 tcagggaatt gtaactgcag tcaatgtgtg tgtcctgtta tttgtcatag tagctggcag 1021 ttatctcggc ttcaagacag gttggcctgg ttatgaactt ccaacagggt tctttccatt 1081 cggagtagat ggaatgtttg ctggttctgc tacagtcttt tttgcattca ttgggtttga 1141 ttcggttgca agtaccgcag aggaggtgag aaatccccaa cgggatttac cgattggtat 1201 tggtcttgct ctcttgttat gttgttctct ctacatgatg gtctccatag ttattgttgg 1261 tttaattcct tactatgcaa tggatcccga caccccgata tcctctgcat tcgctagtca 1321 tgacatgcaa tgggctgtat acttaataac tttaggagct gtcatggcac tctgctcagc 1381 tttaatgggt gcccttctcc ctcagccacg aattctgatg gcaatggcta gggatggtct 1441 gctcccttct attttttcag acattaataa acgcacacag gttccggtta aagcaacagt 1501 ggcaactggg ttgtgtgctg caaccttagc gttctttatg gatgtttcac agcttgcagg 1561 gatggtgagt gttgggacac ttctggcatt tacaatggtg gcaatatcag tgttgatact 1621 aagatatgtt cctccagatg agcaacctct tccgtcatct cttcaagaga gaattgattc 1681 tgtttccttt atatgtggtg aaacaacgtc atccggtcat gttggtactt ccgatagcag 1741 tcaccagcct ttaatagtta ataatgatgc tttggtcgat gtcccactta tcaagaatca 1801 agaagctcta gggtgtttgg ttctcagcga ggaaaccaga aggattgtcg ctggatggag 1861 cattatgttc acatgtgttg gggccttcct tttaagttat gcggcatcaa gcctgagctt 1921 cccagggctt attagatatc cgttgtgtgg tgttggtgga tgtctcctcc ttgctggttt 1981 gattgctctg agttccatag atcaggatga tgcgagacac acttttggac attctggagg 2041 ttacatgtgc ccgtttgttc ccctcctacc tatcatctgc attctcatca acatgtacct 2101 tttggttaac cttggatctg cgacatgggc tcgtgtatcg gtgtggctgc ttataggagt 2161 gattgtgtat gttttctatg gtcggaaaaa cagttcgctt gccaatgcag tttacgtaac 2221 tacagctcat gcggaggaga tatatcgcga acatgaaggt tctttggcat agtctgagaa 2281 agcagcatct cttttgttat atatgtaaca caaatctgta ttatctttat ctggatgtaa 2341 cagcaagagt ggcactatct atttgtttgc aaaaagatct gtccacggcc tttgtaaata 2401 atatatatca tcatcaattc ataatcagga aagactcact tttcagttct caagaa //