CHEBI:51608 - yakima yellow phosphoramidite

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name yakima yellow phosphoramidite
ChEBI ID CHEBI:51608
Definition A fluorescent dye having an absorption wavelength of 530 nm and an emission wavelength of 550 nm, derived from fluorescein.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
Download Molfile XML SDF
Formula C48H61Cl4N2O11P
Net Charge 0
Average Mass 1014.79100
Monoisotopic Mass 1012.27671
InChI InChI=1S/C48H61Cl4N2O11P/c1-26(2)54(27(3)4)66(61-21-19-55)60-20-15-13-12-14-18-53-37(56)17-16-29-22-32-42(38(52)41(29)64-45(59)47(9,10)11)62-39-28(5)40(63-44(58)46(6,7)8)36(51)25-33(39)48(32)31-24-35(50)34(49)23-30(31)43(57)65-48/h22-27,55H,12-21H2,1-11H3,(H,53,56)
InChIKey VGBRSXHVKYAAQZ-UHFFFAOYSA-N
SMILES CC(C)N(C(C)C)P(OCCO)OCCCCCCNC(=O)CCc1cc2c(Oc3c(C)c(OC(=O)C(C)(C)C)c(Cl)cc3C22OC(=O)c3cc(Cl)c(Cl)cc23)c(Cl)c1OC(=O)C(C)(C)C
Roles Classification
Application(s): fluorochrome
A fluorescent dye used to stain biological specimens.
dye

(via xanthene dye )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing yakima yellow phosphoramidite (CHEBI:51608) has functional parent fluorescein (lactone form) (CHEBI:31624)
yakima yellow phosphoramidite (CHEBI:51608) has role fluorochrome (CHEBI:51217)
yakima yellow phosphoramidite (CHEBI:51608) is a phosphoramidite (CHEBI:59751)
yakima yellow phosphoramidite (CHEBI:51608) is a pivalate ester (CHEBI:50784)
yakima yellow phosphoramidite (CHEBI:51608) is a xanthene dye (CHEBI:37929)
IUPAC Name
2',5,5',6-tetrachloro-7'-{12-[di(propan-2-yl)amino]-15-hydroxy-3-oxo-11,13-dioxa-4-aza-12-phosphapentadecyl}-4'-methyl-3-oxo-3H-spiro[2-benzofuran-1,9'-xanthene]-3',6'-diyl bis(2,2-dimethylpropanoate)
Last Modified
31 March 2017