SEQUENCE BUNDLES

VISUALISE SEQUENCE MOTIFS THAT WOULD OTHERWISE REMAIN HIDDEN

ABOUT

VISUALISE ONLINE

DESKTOP TOOL

EXAMPLES

BY SCIENCE PRACTICE

Sequence Bundles web-app allows you to rapidly visualise
protein sequence alignments, experiment with basic visualisation
settings, and discover hidden sequence motifs.

1 SELECT DATA

Option 1: Paste FASTA data

Paste your protein FASTA data in the box below.
Max. size: 1000 sequences × 1000 positions.
We never store your data.

Data Policy and Disclaimer

We make no permanent records of your FASTA sequence data uploaded on this website. We temporarily store your FASTA data only for the duration of your activity on this website and only for the purpose of visualising your submitted data. We make no permanent record of the images generated from the submitted data. All visualised images are stored for no longer than 60 minutes after being generated and used solely for the purpose of optimising website experience.
This website is managed by Science Practice Ltd and kindly served by EMBL-EBI. By using this website you grant Science Practice Ltd and EMBL-EBI explicit permission to use, process, temporarily store and transfer the submitted data only for the purpose of visualising your data and providing you with its visual representation.
Science Practice Ltd and EMBL-EBI cannot warrant that any data sent to or from this website remains secure, cannot provide any guarantees about the data generated by this website, and accept no liability for the effects resulting from the use of this website.

Upload and validate
Option 2: Upload FASTA file

Select a protein FASTA file from your local drive.
Max. size: 1000 sequences × 1000 positions.
We never store your data.

Data Policy and Disclaimer

We make no permanent records of your FASTA sequence data uploaded on this website. We temporarily store your FASTA data only for the duration of your activity on this website and only for the purpose of visualising your submitted data. We make no permanent record of the images generated from the submitted data. All visualised images are stored for no longer than 60 minutes after being generated and used solely for the purpose of optimising website experience.
This website is managed by Science Practice Ltd and kindly served by EMBL-EBI. By using this website you grant Science Practice Ltd and EMBL-EBI explicit permission to use, process, temporarily store and transfer the submitted data only for the purpose of visualising your data and providing you with its visual representation.
Science Practice Ltd and EMBL-EBI cannot warrant that any data sent to or from this website remains secure, cannot provide any guarantees about the data generated by this website, and accept no liability for the effects resulting from the use of this website.

Upload and validate

Option 3: Use example data

Adenylate kinase is an enzyme that plays an important role in cellular energy homeostasis. Its LID domain in stabilised by hydrogen bonds in Gram-negative bacteria, and by a metal ion in Gram-positives. Source: Pfam (PF05191); Magliery Lab and Ray Lab at Ohio State University

Use this example

Create Bundle

2 VISUALISE

GO TO POSITION:
 
NO DATA SELECTED YET...
 
 

Download Bundle

Grid
COLUMN WIDTH
SHOW VERTICAL GRID LINES
AMINO ACID ORDERING IN THE Y-AXIS
Line
RESIDUE WIDTH
LINE CURVATURE
LINE COLOUR
Gaps
GAPS CONTINUOUS
GAPS DISCONNECTED
Conservation filter
HIDE RESIDUES CONSERVED LESS THAN: 0%
0%
50%
100%

Apply Changes

3 DOWNLOAD AND CITE

Download your Bundle

Export visualisation preview in .png format.

Download .png image

Share Sequence Bundles

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Cite your Bundle

To acknowledge the use of Sequence Bundles visualisations in publications or talks, please cite:

Sequence Bundles: a novel method for visualising, discovering and exploring sequence motifs. M Kultys, L Nicholas, R Schwarz,
N Goldman, J King.
BMC Proceedings 2014, 8 (Suppl 2): S8

Sequence Bundles were presented and awarded at the BioVis2013 redesign contest.

 
Sequence Bundles were created by Science Practice and developed by Science Practice in collaboration with the Goldman Group at EMBL-EBI.
This web-app was designed by Science Practice and developed by Joe Lau. Kindly hosted on EMBL-EBI servers.
To learn more about Sequence Bundles, read our paper: BMC Proceedings 2014, 8 (Suppl 2): S8.
All content © Science Practice Ltd 2010-2016