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Entry Information
Entry status
(1)
Experimental methods
(2)
X-ray diffraction
(16)
Electron Microscopy
(1)
Authors
(195)
Christianson DW
(5)
Albrecht D
(3)
Berndt L
(3)
Deardorff MA
(3)
Decroos C
(3)
Dorre B
(3)
Dörre B
(3)
Girbardt B
(3)
Graf LG
(3)
Hocking DM
(3)
Hofmann K
(3)
Janetzky M
(3)
Jebeli L
(3)
Lammers M
(3)
Moreno-Yruela C
(3)
Olsen CA
(3)
Palm GJ
(3)
Qin C
(3)
Schmoker O
(3)
Schmöker O
(3)
Schulze S
(3)
Sievers S
(3)
Strugnell RA
(3)
Wang N
(3)
Weis DM
(3)
Zuhlke D
(3)
Zühlke D
(3)
Bowman CB
(2)
Bowman CM
(2)
Christianson KE
(2)
Moser J-AS
(2)
Moser JA
(2)
Alfieri C
(1)
Allali-Hassani A
(1)
Andrade L
(1)
Arrowsmith CH
(1)
Arvai A
(1)
Bochkarev A
(1)
Breslow R
(1)
Buck IM
(1)
Buggy JJ
(1)
Caby S
(1)
Casero Jr RA
(1)
Casero RA
(1)
Cavarelli J
(1)
Chi E
(1)
Choudhary JS
(1)
Cleasby A
(1)
Cohen A
(1)
Cons BD
(1)
Cui K
(1)
Cura V
(1)
Dawson L
(1)
Dickmanns A
(1)
Donigian JR
(1)
Dougan DR
(1)
East C
(1)
Edwards AM
(1)
Fedorowicz G
(1)
Ficner R
(1)
Finnin MS
(1)
Flicke B
(1)
Foley JR
(1)
Fong R
(1)
Futamura T
(1)
Geraldy MNE
(1)
Goto S
(1)
Griffiths-Jones C
(1)
Gunkel N
(1)
Gunzner J
(1)
Géraldy MNE
(1)
Hai Y
(1)
Hashimoto T
(1)
Hauser A
(1)
Hauser AT
(1)
Heightman TD
(1)
Heise CE
(1)
Herbst-Gervasoni CJ
(1)
Hildmann C
(1)
Ho JD
(1)
Huang J
(1)
Ishikawa S
(1)
Ito H
(1)
Jennings AJ
(1)
Jung M
(1)
Kaminker JS
(1)
Kaneko Y
(1)
Kannan S
(1)
Katz BA
(1)
Kawato T
(1)
Klinke G
(1)
Knuth MW
(1)
Koliopolous MG
(1)
Koliopoulos MG
(1)
Kondo K
(1)
Koth CM
(1)
Krantz ID
(1)
Kurihara N
(1)
Kuster B
(1)
Kwiatkowski NP
(1)
More...
Homo / hetero assembly
(2)
homo
(16)
hetero
(1)
Assembly composition
(2)
protein structure
(16)
protein/protein complex
(1)
Assembly polymer count
(4)
monomer
(13)
tetramer
(2)
dimer
(1)
trimer
(1)
Resolution distribution
1.0 - 1.5
(1)
1.5 - 2
(9)
2.0 - 2.5
(5)
2.5 - 3
(2)
Release year distribution
1995 - 2000
(1)
2000 - 2005
(2)
2005 - 2010
(2)
2010 - 2015
(5)
2015 - 2020
(3)
2020 - 2025
(7)
Journal
(12)
Nat Commun
(4)
ACS Chem Biol
(2)
J Biol Chem
(2)
ACS Med Chem Lett
(1)
J Am Chem Soc
(1)
J Mol Biol
(1)
J Struct Biol
(1)
Nat Chem Biol
(1)
Nature
(1)
PLoS Pathog
(1)
Structure
(1)
To be published
(1)
Macromolecules
Organism superkingdom
(2)
Eukaryota
(12)
Bacteria
(5)
Organism name
(8)
Homo sapiens
(9)
Danio rerio
(2)
Alcaligenaceae bacterium FB188
(1)
Aquifex aeolicus
(1)
Klebsiella pneumoniae subsp. ozaenae
(1)
Rhizorhabdus wittichii DC-6
(1)
Schistosoma mansoni
(1)
Vibrio cholerae
(1)
Molecule name
(36)
Histone deacetylase 8
(5)
HD8
(4)
Protein deacetylase HDAC8
(4)
Protein decrotonylase HDAC8
(4)
HD2
(3)
Histone deacetylase 2
(3)
Histone deacetylase domain-containing protein
(3)
Protein deacylase HDAC2
(3)
Acetoin utilization protein
(1)
Acetoin utilization protein AcuC
(1)
Deacetylase
(1)
Dimethoate hydrolase
(1)
HD7
(1)
HD7a
(1)
HDAC-like amidohydrolase
(1)
HDAH
(1)
Histone deacetylase
(1)
Histone deacetylase 10
(1)
Histone deacetylase 6
(1)
Histone deacetylase 7
(1)
Histone deacetylase 7A
(1)
Histone deacetylase complex subunit Sin3b
(1)
Histone deacetylase-like amidohydrolase
(1)
LTA-4 hydrolase
(1)
Leukotriene A(4) hydrolase
(1)
Leukotriene A-4 hydrolase
(1)
PHD factor 1
(1)
PHD finger protein 12
(1)
Paired amphipathic helix protein Sin3b
(1)
Pf1
(1)
Polyamine deacetylase HDAC10
(1)
Protein deacetylase HDAC7
(1)
Transcriptional corepressor Sin3b
(1)
Tripeptide aminopeptidase LTA4H
(1)
UBP-type domain-containing protein
(1)
histone deacetylase
(1)
Molecule type
(1)
Protein
(17)
Gene names
(22)
HDAC8
(5)
CDA07
(4)
HDACL1
(4)
HDAC2
(3)
hdaH
(2)
BC353_06500
(1)
HDAC7
(1)
HDAC7A
(1)
KIAA0700
(1)
KIAA1523
(1)
LTA4
(1)
LTA4H
(1)
NCTC10313_02007
(1)
NCTC5050_05964
(1)
PHF12
(1)
SIN3B
(1)
acuC1
(1)
aq_1023
(1)
dmhA
(1)
hdaH1
(1)
hdac10
(1)
hdac6
(1)
Interacting Molecules
(3)
Histone deacetylase 2
(1)
PHD finger protein 12
(1)
Paired amphipathic helix protein Sin3b
(1)
Interacting ligands
(20)
SHH : OCTANEDIOIC ACID HYDROXYAMIDE PHENYLAMIDE
(17)
ZN : ZINC ION
(17)
K : POTASSIUM ION
(11)
GOL : GLYCEROL
(5)
CA : CALCIUM ION
(3)
EDO : 1,2-ETHANEDIOL
(3)
ACT : ACETATE ION
(2)
NA : SODIUM ION
(2)
PEG : DI(HYDROXYETHYL)ETHER
(2)
PG4 : TETRAETHYLENE GLYCOL
(2)
CL : CHLORIDE ION
(1)
DMF : DIMETHYLFORMAMIDE
(1)
IMD : IMIDAZOLE
(1)
KK0 : (5~{S})-5-(4-chlorophenyl)pyrrolidin-2-one
(1)
KZF : 2-(cyclohexylazaniumyl)ethanesulfonate
(1)
MG : MAGNESIUM ION
(1)
NHE : 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
(1)
OCA : OCTANOIC ACID (CAPRYLIC ACID)
(1)
PO4 : PHOSPHATE ION
(1)
YB : YTTERBIUM (III) ION
(1)
Function and Biology
EC number / name
(5)
3.5.1.98 : Histone deacetylase
(10)
3.3.2.6 : Leukotriene-A(4) hydrolase
(1)
3.4.11.4 : Tripeptide aminopeptidase
(1)
3.5.1.48 : Acetylspermidine deacetylase
(1)
3.5.1.62 : Acetylputrescine deacetylase
(1)
Biological function
(36)
histone deacetylase activity
(13)
hydrolase activity
(11)
metal ion binding
(9)
protein binding
(7)
protein lysine deacetylase activity
(7)
DNA-binding transcription factor binding
(6)
histone deacetylase activity, hydrolytic mechanism
(6)
histone decrotonylase activity
(6)
protein decrotonylase activity
(6)
Hsp70 protein binding
(4)
Hsp90 protein binding
(4)
RNA binding
(3)
deacetylase activity
(3)
NF-kappaB binding
(2)
RNA polymerase II-specific DNA-binding transcription factor binding
(2)
chromatin binding
(2)
enzyme binding
(2)
heat shock protein binding
(2)
histone binding
(2)
histone deacetylase binding
(2)
nucleosomal DNA binding
(2)
promoter-specific chromatin binding
(2)
protein de-2-hydroxyisobutyrylase activity
(2)
protein lysine delactylase activity
(2)
transcription coregulator binding
(2)
zinc ion binding
(2)
acetylputrescine deacetylase activity
(1)
acetylspermidine deacetylase activity
(1)
aminopeptidase activity
(1)
epoxide hydrolase activity
(1)
leukotriene-A4 hydrolase activity
(1)
metalloaminopeptidase activity
(1)
metallopeptidase activity
(1)
peptidase activity
(1)
transcription corepressor activity
(1)
tripeptide aminopeptidase activity
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
Entries 1 to 10 of 17
Select all entries on this page
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with SAHA
Hai Y, Christianson DW
Nat Chem Biol
(2016)
[PMID: 27454933 ]
Source organism: Danio rerio
Assembly composition: protein only structure
Assembly name:
UBP-type domain-containing protein
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-123745 (Preferred)
search this ID

Cryo-EM structure of the human SIN3B histone deacetylase core complex with SAHA at 2.8 Angstrom
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with SAHA
Herbst-Gervasoni CJ, Christianson DW
J Am Chem Soc
(2022)
[PMID: 36200994 ]
Source organism: Danio rerio
Assembly composition: protein only structure
Assembly name:
Polyamine deacetylase HDAC10
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-123343 (Preferred)
search this ID

Crystal Structure of Rhizorhabdus wittichii Dimethoate hydrolase (DmhA) in complex with SAHA
Graf LG, Lammers M, Schulze S, Palm GJ
Nat Commun
(2024)
[PMID: 39489725 ]
Source organism: Rhizorhabdus wittichii DC-6
Assembly composition: protein only structure
Assembly name:
Histone deacetylase domain-containing protein
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-280676 (Preferred)
search this ID

Crystal Structure of Deacetylase (HdaH) from Vibrio cholerae in complex with SAHA
Graf LG, Schulze S, Lammers M, Palm GJ
Nat Commun
(2024)
[PMID: 39489725 ]
Source organism: Vibrio cholerae
Assembly composition: protein only structure
Assembly name:
Histone deacetylase domain-containing protein
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-280720 (Preferred)
search this ID

Crystal Structure of Deacetylase (HdaH) from Klebsiella pneumoniae subsp. ozaenae in complex with the inhibitor SAHA
Qin C, Graf LG, Schulze S, Palm GJ, Lammers M
Nat Commun
(2024)
[PMID: 39489725 ]
Source organism: Klebsiella pneumoniae subsp. ozaenae
Assembly composition: protein only structure
Assembly name:
Histone deacetylase domain-containing protein
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-280717 (Preferred)
search this ID

Crystal structure of human histone deacetylase 8 (HDAC8) I45T mutation complexed with SAHA
Osko JD, Christianson DW, Decroos C, Porter NJ, Lee M
J Struct Biol
(2021)
[PMID: 33316326 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone deacetylase 8
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-189815 (Preferred)
search this ID

Crystal structure of I243N HDAC8 in complex with SAHA
Decroos C, Bowman CB, Moser J-AS, Christianson KE, Deardorff MA, Christianson DW
ACS Chem Biol
(2014)
[PMID: 25075551 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone deacetylase 8
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-189815 (Preferred)
search this ID

Crystal structure of a HDAC-like protein with SAHA bound
Nielsen TK, Hildmann C, Dickmanns A, Schwienhorst A, Ficner R
J Mol Biol
(2005)
[PMID: 16242151 ]
Source organism: Alcaligenaceae bacterium FB188
Assembly composition: protein only structure
Assembly name:
Histone deacetylase-like amidohydrolase
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-180684 (Preferred)
search this ID

Crystal Structure of human HDAC8 complexed with SAHA
Somoza JR, Skene RJ, Katz BA, Mol C, Ho JD, Jennings AJ, Luong C, Arvai A, Buggy JJ, Chi E, Tang J, Sang B-C, Verner E, Wynands R, Leahy EM, Dougan DR, Snell G, Navre M, Knuth MW, Swanson RV, McRee DE, Tari LW
Structure
(2004)
[PMID: 15242608 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone deacetylase 8
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-189815 (Preferred)
search this ID

Entries 1 to 10 of 17