Examples: STIGLCNAGHEMCLC_000191PRD_000468

MTH

2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-METHYLSULFANYLMETHYL-TETRAHYDRO-FURAN-3,4-DIOL

Description

Synonyms
5'-DEOXY-5'-(METHYLTHIO)-TUBERCIDIN
Formula
C12 H16 N4 O3 S
IUPAC InChI
InChI=1S/C12H16N4O3S/c1-20-4-7-8(17)9(18)12(19-7)16-3-2-6-10(13)14-5-15-11(6)16/h2-3,5,7-9,12,17-18H,4H2,1H3,(H2,13,14,1...Show more
IUPAC InChIKey
WBPLMFVTQMIPLW-MFYTUXHUSA-N
SMILES
CSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2ccc3c2ncnc3N)O)O
Source OpenEye
First observed in

Overall view, and highlighted
scaffolds and fragments 

This image gallery displays several views of the ligand structure:

  • Basic Structural Representation: Shows the overall structure of the ligand.
  • Detailed Structural Representation: Highlights individual atoms within the ligand.
  • Murcko Scaffold: Presents the scaffold of the ligand highlighted in yellow.
  • Highlighted Fragments: Displays various ligand fragments, highlighted in yellow.

CSS5'C5'C4'O4'C2'O2'C3'O3'C1'N9C8C7C5C6N6N1C2N3C4

Displayed: 1 / 5

Atom labelled MTH

Physicochemical properties

Molecular properties
Molecular weight
Total mass of the molecule in Daltons
296.1 Da
Labute accessible surface area
Accessible surface area according to the Labute's definition
142.1 Å 2
Heavy atoms
Number of non-hydrogen atoms
20
Heteroatoms
Number of non-oxygen and non-carbon atoms
8
Carbon SP3 value
Fraction of C atoms that are SP3 hybridized
0.5
Wildman-Crippen molar refractivity
Wildman-Crippen molar refractivity is a common descriptor accounting for molecular size and polarizability
73.2
Wildman-Crippen Log P
Octanol/Water partition coefficient predicted using Wildman-Crippen method
-0.8
Conformational properties
Rotatable bonds
Number of single bonds, not part of a ring bound to a nonterminal heavy atom
7
Ring properties
Aromatic rings
Number of aromatic rings
2
Rings
Number of rings
3
Aliphatic rings
Number of aliphatic rings
1
Heterocycles
Number or rings with at least two different elements
3
Saturated rings
Number of saturated rings
1
Aromatic heterocycles
Number of aromatic heterocyles
2
Saturated heterocycles
Number of saturated heterocyles
1
Aliphatic heterocycles
Number of aliphatic heterocycles
1
Spiro atoms
Atoms shared between rings that share exactly one atom
0
Bridgehead atoms
Number of atoms shared between rings that share at least two bonds
0
Surface properties
Topological surface area
Topological surface area
106.4
Functional group properties
Hydrogen bond donors
Number of hydrogen bond donors
3
Hydrogen bond acceptors
Number of hydrogen bond acceptors
8
Amide bonds
Number of amide bonds
0
Stereochemical properties
Stereocenters
Number of atoms with four attachments different from each other
4

Bound structures

Found as a bound ligand in 3 distinct proteins and 4 PDB Structures. Group data by:

1 to 3 of 3. Page 1 of 1

Protein name

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

PDB-KB Proteins

P0AF12

EC number

3.2.2.9

Ligand annotation

Unannotated

Total structures

2

Protein name

5'-methylthioadenosine nucleosidase

PDB-KB Proteins

Q9T0I8

EC number

3.2.2.16

Ligand annotation

Unannotated

Total structures

2

Protein name

S-methyl-5'-thioadenosine phosphorylase

PDB-KB Proteins

Q13126

EC number

2.4.2.28

Ligand annotation

Unannotated

Total structures

2

Items per page:
1 – 3 of 3

Interaction statistics

Interaction statistics shows the summary of aggregated protein-ligand interaction data of MTH from 10 ligand instances in 3 PDB structures and 4 PDB chains. The protein-ligand interactions are computed using PDBe Arpeggio
Documentation

Ligand atoms

Sort by:
Ligand interactions

Percentage of interactions by ligand atom compared to the total interactions of the ligand

Amino acid interactions

Percentage of interactions between ligand atom-amino acid pair compared to the total interactions of the amino acid

Icons:
Positively charged
Negatively charged
Polar
Hydrophobic
Aromatic
Aromatic (Trp)
Glycine
Cysteine
Proline

Atom-wise interactions of MTH molecule

Percentage of interactions by ligand atom compared to the total interactions of the ligand

For full interaction statistics, including the heatmap showing ligand atom interaction frequency with different amino acids, please view on a larger screen

Ligand-specific databases

ChEMBL

CHEMBL551561

CCDC

QUZJEB

PubChem

188350

DrugBank

DB02933

Probes And Drugs

PD007945

ZINC

ZINC000005141416

BRENDA

91802 4687 43484 232471

Nikkaji

J1.894.302F