› 1c8h

X-ray diffraction
3.5Å resolution

CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5

Released:
DOI: 10.2210/pdb1c8h/pdb
PDB entry 1c8h coloured by chain, front view.
PDB entry 1c8h coloured by chain, side view.
PDB entry 1c8h coloured by chain, top view.
Source organism: Canine parvovirus
Primary publication:
Host range and variability of calcium binding by surface loops in the capsids of canine and feline parvoviruses.
Simpson AA, Chandrasekar V, Hébert B, Sullivan GM, Rossmann MG, Parrish CR
J Mol Biol 300 597-610 (2000)
PMID: 10884355

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148071 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 584 amino acids
Theoretical weight: 64.71 KDa
Source organism: Canine parvovirus
UniProt:
  • Canonical: P17455 (Residues: 144-727; Coverage: 80%)
  • Best match: P17455-2 (Residues: 1-584)
Sequence domains: Parvovirus coat protein VP2
Structure domains: Parvovirus coat protein VP1/VP2

Ligands and Environments

1 bound ligand:
Ligand CA 2 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: P1
Unit cell:
a: 254.493Å b: 253.601Å c: 452.044Å
α: 77.48° β: 74.91° γ: 69.27°
R-values:
R R work R free
0.26 not available not available

Quick links

Citations

9 review citations

Viral calciomics: interplays between Ca2+ and virus.
Zhou et al. (2009)
8 more

3 mentions without citation

Twenty-Five Years of Structural Parvovirology.
Mietzsch et al. (2019)
2 more