› 1cjd

X-ray diffraction
1.85Å resolution

THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON

Released:
DOI: 10.2210/pdb1cjd/pdb
PDB entry 1cjd coloured by chain, front view.
PDB entry 1cjd coloured by chain, side view.
PDB entry 1cjd coloured by chain, top view.
Source organism: Enterobacteria phage PRD1
Primary publication:
Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures.
Benson SD, Bamford JK, Bamford DH, Burnett RM
Cell 98 825-33 (1999)
PMID: 10499799

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-149665 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein P3 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 394 amino acids
Theoretical weight: 43.35 KDa
Source organism: Enterobacteria phage PRD1
Expression system: Salmonella enterica subsp. enterica serovar Typhimurium
UniProt:
  • Canonical: P22535 (Residues: 2-395; Coverage: 100%)
Gene name: III
Sequence domains: P3 major capsid protein
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C
Spacegroup: P212121
Unit cell:
a: 117.956Å b: 121.296Å c: 126.387Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.178 0.205
Expression system: Salmonella enterica subsp. enterica serovar Typhimurium

Quick links

Citations

41 review citations

Phage genomics: small is beautiful.
Brüssow et al. (2002)
40 more

4 mentions without citation

Superimposition of Viral Protein Structures: A Means to Decipher the Phylogenies of Viruses.
Ravantti et al. (2020)
3 more