1svf

X-ray diffraction
1.4Å resolution

PARAMYXOVIRUS SV5 FUSION PROTEIN CORE

Released:
Source organism: Simian virus 5 (strain W3)
Primary publication:
Structural basis for paramyxovirus-mediated membrane fusion.
Mol Cell 3 309-19 (1999)
PMID: 10198633

Function and Biology Details

Biochemical function:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
hetero hexamer
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-138209 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Fusion glycoprotein F1 Chains: A, C
Molecule details ›
Chains: A, C
Length: 64 amino acids
Theoretical weight: 6.43 KDa
Source organism: Simian virus 5 (strain W3)
Expression system: Escherichia coli
UniProt:
  • Canonical: P04849 (Residues: 122-185; Coverage: 13%)
Gene name: F
Structure domains: Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Fusion glycoprotein F1 Chains: B, D
Molecule details ›
Chains: B, D
Length: 38 amino acids
Theoretical weight: 4.07 KDa
Source organism: Simian virus 5 (strain W3)
Expression system: Escherichia coli
UniProt:
  • Canonical: P04849 (Residues: 440-477; Coverage: 8%)
Gene name: F

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 5ID-B
Spacegroup: P3
Unit cell:
a: 41.6Å b: 41.6Å c: 95.6Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.181 0.181 0.202
Expression system: Escherichia coli