› 1w7c

X-ray diffraction
1.23Å resolution

PPLO at 1.23 Angstroms

Released:
DOI: 10.2210/pdb1w7c/pdb
PDB entry 1w7c coloured by chain, front view.
PDB entry 1w7c coloured by chain, side view.
PDB entry 1w7c coloured by chain, top view.
Source organism: Komagataella pastoris
Primary publication:
The 1.23 Angstrom structure of Pichia pastoris lysyl oxidase reveals a lysine-lysine cross-link.
Duff AP, Cohen AE, Ellis PJ, Hilmer K, Langley DB, Dooley DM, Freeman HC, Guss JM
Acta Crystallogr D Biol Crystallogr 62 1073-84 (2006)
PMID: 16929109

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188778 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Amine oxidase Chain: A
Molecule details ›
Chain: A
Length: 747 amino acids
Theoretical weight: 85.29 KDa
Source organism: Komagataella pastoris
Expression system: Komagataella pastoris
UniProt:
  • Canonical: Q96X16 (Residues: 41-787; Coverage: 97%)
Gene names: AOC1, ATY40_BA7504703
Sequence domains:
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer
6 bound ligands:
Ligand CU 1 x CU
Ligand CA 2 x CA
Ligand MG 5 x MG
Ligand CL 5 x CL
Ligand IMD 1 x IMD
Ligand NAG 4 x NAG
1 modified residue:
Ligand TPQ 1 x TPQ

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: C2
Unit cell:
a: 139.948Å b: 67.027Å c: 108.688Å
α: 90° β: 118.95° γ: 90°
R-values:
R R work R free
0.113 0.112 0.146
Expression system: Komagataella pastoris

Quick links

Citations

3 citation in other articles

High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2.
Murakawa et al. (2013)
2 more

7 mentions without citation

Copper active sites in biology.
Solomon et al. (2014)
6 more