› 2df7

X-ray diffraction
2.6Å resolution

Crystal structure of infectious bursal disease virus VP2 subviral particle

Released:
DOI: 10.2210/pdb2df7/pdb
PDB entry 2df7 coloured by chain, front view.
PDB entry 2df7 coloured by chain, side view.
PDB entry 2df7 coloured by chain, top view.
Source organism: Infectious bursal disease virus
Primary publication:
Crystal structure of infectious bursal disease virus VP2 subviral particle at 2.6A resolution: implications in virion assembly and immunogenicity.
Lee CC, Ko TP, Chou CC, Yoshimura M, Doong SR, Wang MY, Wang AH
J Struct Biol 155 74-86 (2006)
PMID: 16677827

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194376 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
PP Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
Length: 458 amino acids
Theoretical weight: 49.33 KDa
Source organism: Infectious bursal disease virus
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q9WR38 (Residues: 1-452; Coverage: 45%)
Sequence domains: Birnavirus VP2 protein
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CL 8 x CL
Ligand CA 8 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: P213
Unit cell:
a: 316.412Å b: 316.412Å c: 316.412Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.168 0.165 0.215
Expression system: Trichoplusia ni

Quick links

Citations

2 review citations

Advances in vaccine research against economically important viral diseases of food animals: Infectious bursal disease virus.
Jackwood DJ. (2017)
1 more

10 mentions without citation

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling.
Baker et al. (2013)
9 more