› 2dsx

X-ray diffraction
0.68Å resolution

Crystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68 A resolution

Released:
DOI: 10.2210/pdb2dsx/pdb
PDB entry 2dsx coloured by chain, front view.
PDB entry 2dsx coloured by chain, side view.
PDB entry 2dsx coloured by chain, top view.
Source organism: Megalodesulfovibrio gigas
Primary publication:
Crystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68 A resolution.
Chen CJ, Lin YH, Huang YC, Liu MY
Biochem Biophys Res Commun 349 79-90 (2006)
PMID: 16930541

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132363 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Rubredoxin Chain: A
Molecule details ›
Chain: A
Length: 52 amino acids
Theoretical weight: 5.68 KDa
Source organism: Megalodesulfovibrio gigas
UniProt:
  • Canonical: P00270 (Residues: 1-52; Coverage: 100%)
Sequence domains: Rubredoxin
Structure domains: Rubrerythrin, domain 2

Ligands and Environments

1 bound ligand:
Ligand FE 1 x FE
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL12B2
Spacegroup: P21
Unit cell:
a: 19.474Å b: 41.324Å c: 24.129Å
α: 90° β: 108.2° γ: 90°
R-values:
R R work R free
0.103 0.099 0.111

Quick links

Citations

1 review citation

Thiol dioxygenases: unique families of cupin proteins.
Stipanuk et al. (2011)
12 other articles

15 mentions without citation

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Tebo et al. (2015)
14 more