› 2fz1

X-ray diffraction
2.9Å resolution

Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K

Released:
DOI: 10.2210/pdb2fz1/pdb
PDB entry 2fz1 coloured by chain, front view.
PDB entry 2fz1 coloured by chain, side view.
PDB entry 2fz1 coloured by chain, top view.
Source organism: Turnip yellow mosaic virus (Australian isolate)
Primary publication:
The RNA of turnip yellow mosaic virus exhibits icosahedral order.
Larson SB, Lucas RW, Greenwood A, McPherson A
Virology 334 245-54 (2005)
PMID: 15780874

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148852 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 189 amino acids
Theoretical weight: 20.21 KDa
Source organism: Turnip yellow mosaic virus (Australian isolate)
Expression system: Brassica rapa subsp. chinensis
UniProt:
  • Canonical: P20125 (Residues: 1-189; Coverage: 100%)
Sequence domains: Tymovirus coat protein
Structure domains: Jelly Rolls

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.2
Spacegroup: P6422
Unit cell:
a: 511.36Å b: 511.36Å c: 304.31Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.366 0.309 0.315
Expression system: Brassica rapa subsp. chinensis

Quick links

Citations

2 review citations

The structural and functional role of RNA in icosahedral virus assembly.
Schneemann A. (2006)
1 more

1 mention without citation

A Two-Layer SVM Ensemble-Classifier to Predict Interface Residue Pairs of Protein Trimers.
Lyu et al. (2020)