› 2g1g

Solution NMR

Solution structure of the anticodon loop of S. Pombe tRNAi including the naturally occurring N6-threonyl adenine

Released:
DOI: 10.2210/pdb2g1g/pdb
PDB entry 2g1g coloured by chain, ensemble of 20 models, front view.
PDB entry 2g1g coloured by chain, ensemble of 20 models, side view.
PDB entry 2g1g coloured by chain, ensemble of 20 models, top view.
Source organism: Synthetic construct
Primary publication:
The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif.
Lescrinier E, Nauwelaerts K, Zanier K, Poesen K, Sattler M, Herdewijn P
OpenAccess logo Nucleic Acids Res 34 2878-86 (2006)
PMID: 16738127

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196358 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
5'-R(*AP*CP*GP*GP*GP*CP*UP*CP*AP*UP*(T6A)P*AP*CP*CP*CP*GP*U)-3' Chain: A
Molecule details ›
Chain: A
Length: 17 nucleotides
Theoretical weight: 5.55 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand T6A 1 x T6A

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics
Expression system: Not provided

Quick links

Citations

6 review citations

tRNA's wobble decoding of the genome: 40 years of modification.
Agris et al. (2007)
5 more

1 mention without citation

The universal Sua5/TsaC family evolved different mechanisms for the synthesis of a key tRNA modification.
Pichard-Kostuch et al. (2023)