› 2mrp

Solution NMR

NMR solution structure of the Ubiquitin like domain (UBL) of DNA-damage-inducible 1 protein (Ddi1)

Released:
DOI: 10.2210/pdb2mrp/pdb
PDB entry 2mrp coloured by chain, ensemble of 10 models, front view.
PDB entry 2mrp coloured by chain, ensemble of 10 models, side view.
PDB entry 2mrp coloured by chain, ensemble of 10 models, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
DNA-damage-inducible 1 protein (Ddi1) contains an uncharacteristic ubiquitin-like domain that binds ubiquitin.
Nowicka U, Zhang D, Walker O, Krutauz D, Castañeda CA, Chaturvedi A, Chen TY, Reis N, Glickman MH, Fushman D
Structure 23 542-557 (2015)
PMID: 25703377

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-154021 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DNA damage-inducible protein 1 Chain: A
Molecule details ›
Chain: A
Length: 94 amino acids
Theoretical weight: 10.59 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: P40087 (Residues: 2-80; Coverage: 19%)
Gene names: DDI1, VSM1, YER143W
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 92%
Refinement method: simulated annealing
Expression system: Escherichia coli

Quick links

Citations

10 review citations

The recognition of ubiquitinated proteins by the proteasome.
Grice et al. (2016)
9 more

1 mention without citation

DNA-damage-inducible 1 protein (Ddi1) contains an uncharacteristic ubiquitin-like domain that binds ubiquitin.
Nowicka et al. (2015)