› 2p8d

X-ray diffraction
1.9Å resolution

The Structure of the Dickerson Sequence with an Incorporated CeNA Residue

Released:
DOI: 10.2210/pdb2p8d/pdb
PDB entry 2p8d coloured by chain, front view.
PDB entry 2p8d coloured by chain, side view.
PDB entry 2p8d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(CGCGAATTCGCG).
Robeyns K, Herdewijn P, Van Meervelt L
OpenAccess logo Nucleic Acids Res 36 1407-14 (2008)
PMID: 18160414

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-115757 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR)P*DTP*DTP*DCP*DGP*DCP*DG)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.67 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand NCO 3 x NCO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE BW7B
Spacegroup: P2221
Unit cell:
a: 24.915Å b: 38.78Å c: 66.923Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.233 0.23 0.308
Expression system: Not provided

Quick links

Citations

1 review citation

Nucleic acids with a six-membered 'carbohydrate' mimic in the backbone.
Herdewijn P. (2010)
5 other articles

2 mentions without citation

The many twists and turns of DNA: template, telomere, tool, and target.
Egli et al. (2010)
1 more