2pzs

X-ray diffraction
2.6Å resolution

Phi29 DNA polymerase complexed with primer-template DNA (post-translocation binary complex)

Released:

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero trimer (preferred)
hetero dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-115793 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
DNA polymerase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 575 amino acids
Theoretical weight: 66.72 KDa
Source organism: Bacillus virus phi29
Expression system: Escherichia coli
UniProt:
  • Canonical: P03680 (Residues: 1-575; Coverage: 100%)
Gene name: 2
Sequence domains: DNA polymerase type B, organellar and viral
Structure domains:
5'-d(GACTGCTTAC)-3' Chains: R, X
Molecule details ›
Chains: R, X
Length: 10 nucleotides
Theoretical weight: 3.02 KDa
Source organism: Salasvirus phi29
Expression system: Not provided
5'-d(CTAACACGTAAGCAGTC)-3' Chains: S, T, U, Y
Molecule details ›
Chains: S, T, U, Y
Length: 17 nucleotides
Theoretical weight: 5.18 KDa
Source organism: Salasvirus phi29
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: C2
Unit cell:
a: 216.633Å b: 146.292Å c: 115.054Å
α: 90° β: 117.93° γ: 90°
R-values:
R R work R free
0.225 0.219 0.275
Expression systems:
  • Escherichia coli
  • Not provided