› 2vve

X-ray diffraction
1.77Å resolution

Crystal structure of the stem and receptor binding domain of the spike protein P1 from bacteriophage PM2

Released:
DOI: 10.2210/pdb2vve/pdb
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PDB entry 2vve coloured by chain, front view.
PDB entry 2vve coloured by chain, side view.
PDB entry 2vve coloured by chain, top view.
Source organism: Pseudoalteromonas virus PM2
Primary publication:
Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2.
Abrescia NG, Grimes JM, Kivelä HM, Assenberg R, Sutton GC, Butcher SJ, Bamford JK, Bamford DH, Stuart DI
Mol Cell 31 749-61 (2008)
PMID: 18775333

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195032 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Spike protein P1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 254 amino acids
Theoretical weight: 28.59 KDa
Source organism: Pseudoalteromonas virus PM2
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9XJR3 (Residues: 82-335; Coverage: 76%)
Gene name: I
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CA 4 x CA
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: ESRF BEAMLINE BM14
Spacegroup: P4
Unit cell:
a: 107.894Å b: 107.894Å c: 44.171Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.176 0.173 0.226
Expression system: Escherichia coli

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Citations

23 review citations

Phage diversity, genomics and phylogeny.
Dion et al. (2020)
22 more

1 mention without citation

From lows to highs: using low-resolution models to phase X-ray data.
Stuart et al. (2013)

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