› 2z47

X-ray diffraction
1.6Å resolution

The Y66L mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F

Released:
DOI: 10.2210/pdb2z47/pdb
PDB entry 2z47 coloured by chain, front view.
PDB entry 2z47 coloured by chain, side view.
PDB entry 2z47 coloured by chain, top view.
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Entry authors: Higuchi Y, Komori H

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132281 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 107 amino acids
Theoretical weight: 11.51 KDa
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Expression system: Shewanella
UniProt:
  • Canonical: P00132 (Residues: 24-130; Coverage: 100%)
Gene name: DvMF_2499
Sequence domains: Class III cytochrome C family
Structure domains: Cytochrome C3

Ligands and Environments

1 bound ligand:
Ligand HEC 8 x HEC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P21
Unit cell:
a: 34.424Å b: 69.558Å c: 53.749Å
α: 90° β: 92.73° γ: 90°
R-values:
R R work R free
0.184 0.184 0.216
Expression system: Shewanella

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