› 3auy

X-ray diffraction
2.7Å resolution

Crystal structure of Rad50 bound to ADP

Released:
DOI: 10.2210/pdb3auy/pdb
PDB entry 3auy coloured by chain, front view.
PDB entry 3auy coloured by chain, side view.
PDB entry 3auy coloured by chain, top view.
Source organism: Methanocaldococcus jannaschii
Entry authors: Lim HS, Cho Y

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-176683 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DNA double-strand break repair Rad50 ATPase Chains: A, B
Molecule details ›
Chains: A, B
Length: 371 amino acids
Theoretical weight: 42.39 KDa
Source organism: Methanocaldococcus jannaschii
Expression system: Escherichia coli
UniProt:
  • Canonical: Q58718 (Residues: 1-1005; Coverage: 37%)
Gene names: MJ1322, rad50
Sequence domains: AAA domain
Structure domains: P-loop containing nucleotide triphosphate hydrolases

Ligands and Environments

2 bound ligands:
Ligand ADP 2 x ADP
Ligand MG 2 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P212121
Unit cell:
a: 78.16Å b: 95.3Å c: 110.98Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.228 0.228 0.296
Expression system: Escherichia coli

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