› 3ch0

X-ray diffraction
1.5Å resolution

Crystal structure of glycerophosphoryl diester phosphodiesterase (YP_677622.1) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution

Released:
DOI: 10.2210/pdb3ch0/pdb
PDB entry 3ch0 coloured by chain, front view.
PDB entry 3ch0 coloured by chain, side view.
PDB entry 3ch0 coloured by chain, top view.
Source organism: Cytophaga hutchinsonii ATCC 33406
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-163457 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycerophosphodiester phosphodiesterase Chain: A
Molecule details ›
Chain: A
Length: 272 amino acids
Theoretical weight: 31.1 KDa
Source organism: Cytophaga hutchinsonii ATCC 33406
Expression system: Escherichia coli
Structure domains: Phosphatidylinositol (PI) phosphodiesterase

Ligands and Environments

3 bound ligands:
Ligand CIT 1 x CIT
Ligand EDO 16 x EDO
Ligand GOL 1 x GOL
1 modified residue:
Ligand MSE 7 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 49.532Å b: 61.211Å c: 113.699Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.16 0.158 0.189
Expression system: Escherichia coli

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