› 3dvv

X-ray diffraction
2Å resolution

Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)

Released:
DOI: 10.2210/pdb3dvv/pdb
PDB entry 3dvv coloured by chain, front view.
PDB entry 3dvv coloured by chain, side view.
PDB entry 3dvv coloured by chain, top view.
Source organism: Synthetic construct
Entry authors: Ennifar E, Dumas P, Olieric V

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196653 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
HIV-1 genomic RNA Chains: A, B
Molecule details ›
Chains: A, B
Length: 23 nucleotides
Theoretical weight: 7.4 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand K 4 x K
Ligand CL 1 x CL
Ligand RIO 2 x RIO
1 modified residue:
Ligand OMU 2 x OMU

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: C2
Unit cell:
a: 99.703Å b: 30.489Å c: 58.004Å
α: 90° β: 122.25° γ: 90°
R-values:
R R work R free
0.268 0.268 0.277
Expression system: Not provided

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