3f3p

X-ray diffraction
3.2Å resolution

Crystal structure of the nucleoporin pair Nup85-Seh1, space group P21212

Released:
Source organism: Saccharomyces cerevisiae
Primary publication:
A fence-like coat for the nuclear pore membrane.
Mol Cell 32 815-26 (2008)
PMID: 19111661

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-155501 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nucleoporin SEH1 Chains: A, B, E, F, I, J
Molecule details ›
Chains: A, B, E, F, I, J
Length: 351 amino acids
Theoretical weight: 39.64 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P53011 (Residues: 1-349; Coverage: 100%)
Gene names: SEH1, YGL100W
Sequence domains: WD domain, G-beta repeat
Structure domains: YVTN repeat-like/Quinoprotein amine dehydrogenase
Nucleoporin NUP85 Chains: C, D, G, H, K, L
Molecule details ›
Chains: C, D, G, H, K, L
Length: 570 amino acids
Theoretical weight: 65.68 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P46673 (Residues: 1-570; Coverage: 77%)
Gene names: J1624, NUP85, RAT9, YJR042W
Sequence domains: Nup85 Nucleoporin
Structure domains: N-terminal domain of TfIIb

Ligands and Environments

No bound ligands
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: P21212
Unit cell:
a: 210.239Å b: 226.476Å c: 190.619Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.261 0.261 0.281
Expression system: Escherichia coli