› 3js9

X-ray diffraction
2.5Å resolution

Crystal structure of nucleoside diphosphate kinase family protein from Babesia bovis

Released:
DOI: 10.2210/pdb3js9/pdb
PDB entry 3js9 coloured by chain, front view.
PDB entry 3js9 coloured by chain, side view.
PDB entry 3js9 coloured by chain, top view.
Source organism: Babesia bovis T2Bo
Entry author: Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Function and Biology Details

Reaction catalysed: 
ATP + nucleoside diphosphate = ADP + nucleoside triphosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo hexamer
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108216 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
nucleoside-diphosphate kinase Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 156 amino acids
Theoretical weight: 17.71 KDa
Source organism: Babesia bovis T2Bo
Expression system: Escherichia coli
UniProt:
  • Canonical: A7ANF8 (Residues: 1-148; Coverage: 100%)
Gene name: BBOV_III005290
Sequence domains: Nucleoside diphosphate kinase
Structure domains: Nucleoside diphosphate kinase-like domain

Ligands and Environments

1 bound ligand:
Ligand SO4 13 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.3
Spacegroup: P43212
Unit cell:
a: 125.894Å b: 125.894Å c: 101.512Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.179 0.176 0.221
Expression system: Escherichia coli

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