› 3k3v

X-ray diffraction
1.8Å resolution

Crystal structure the GYF domain of S. Cerevisiae SMY2

Released:
DOI: 10.2210/pdb3k3v/pdb
PDB entry 3k3v coloured by chain, front view.
PDB entry 3k3v coloured by chain, side view.
PDB entry 3k3v coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Entry authors: Ash MR, Faelber K

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-152499 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein SMY2 Chain: A
Molecule details ›
Chain: A
Length: 100 amino acids
Theoretical weight: 11.11 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P32909 (Residues: 193-290; Coverage: 13%)
Gene names: SMY2, YBR1233, YBR172C
Sequence domains: GYF domain
Structure domains: Dna Ligase; domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.2
Spacegroup: P6522
Unit cell:
a: 68.4Å b: 68.4Å c: 111.321Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.208 0.208 0.224
Expression system: Escherichia coli BL21(DE3)

Quick links