› 3klt

X-ray diffraction
2.7Å resolution

Crystal structure of a vimentin fragment

Released:
DOI: 10.2210/pdb3klt/pdb
PDB entry 3klt coloured by chain, front view.
PDB entry 3klt coloured by chain, side view.
PDB entry 3klt coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Atomic structure of vimentin coil 2.
Nicolet S, Herrmann H, Aebi U, Strelkov SV
J Struct Biol 170 369-76 (2010)
PMID: 20176112

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assemblies composition:
homo tetramer (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-140286 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Vimentin Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 72 amino acids
Theoretical weight: 8.3 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P08670 (Residues: 263-334; Coverage: 16%)
Gene name: VIM
Structure domains: Single helix bin

Ligands and Environments

7 bound ligands:
Ligand P33 1 x P33
Ligand SM 3 x SM
Ligand P6G 1 x P6G
Ligand CA 6 x CA
Ligand PG4 2 x PG4
Ligand 1PE 1 x 1PE
Ligand PGE 1 x PGE
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P21
Unit cell:
a: 63.2Å b: 30.1Å c: 82.98Å
α: 90° β: 102.71° γ: 90°
R-values:
R R work R free
0.294 0.291 0.331
Expression system: Escherichia coli

Quick links

Citations

7 review citations

Intermediate Filaments: Structure and Assembly.
Herrmann et al. (2016)
6 more

11 mentions without citation

Type III intermediate filaments as targets and effectors of electrophiles and oxidants.
Viedma-Poyatos et al. (2020)
10 more