› 3n6q

X-ray diffraction
1.8Å resolution

Crystal structure of YghZ from E. coli

Released:
DOI: 10.2210/pdb3n6q/pdb
PDB entry 3n6q coloured by chain, front view.
PDB entry 3n6q coloured by chain, side view.
PDB entry 3n6q coloured by chain, top view.
Source organism: Escherichia coli DH5[alpha]
Primary publication:
Macro-to-micro structural proteomics: native source proteins for high-throughput crystallization.
Totir M, Echols N, Nanao M, Gee CL, Moskaleva A, Gradia S, Iavarone AT, Berger JM, May AP, Zubieta C, Alber T
OpenAccess logo PLoS One 7 e32498 (2012)
PMID: 22393408

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo tetramer (preferred)
homo octamer
Assembly name:
PDBe Complex ID:
PDB-CPX-175142 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
L-glyceraldehyde 3-phosphate reductase Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 346 amino acids
Theoretical weight: 38.88 KDa
Source organism: Escherichia coli DH5[alpha]
UniProt:
  • Canonical: Q46851 (Residues: 1-346; Coverage: 100%)
Gene names: JW2970, b3001, gpr, mgrA, yghZ
Sequence domains: Aldo/keto reductase family
Structure domains: NADP-dependent oxidoreductase domain

Ligands and Environments

1 bound ligand:
Ligand MG 9 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.3.1
Spacegroup: P1
Unit cell:
a: 91.7Å b: 98.056Å c: 98.257Å
α: 90.27° β: 92.97° γ: 106.12°
R-values:
R R work R free
0.171 0.169 0.209

Quick links

Citations

4 review citations

Current trends in protein crystallization.
Gavira JA. (2016)
3 more

4 mentions without citation

Macro-to-micro structural proteomics: native source proteins for high-throughput crystallization.
Totir et al. (2012)
3 more