› 3nlc

X-ray diffraction
2.15Å resolution

Crystal structure of the VP0956 protein from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR147

Released:
DOI: 10.2210/pdb3nlc/pdb
PDB entry 3nlc coloured by chain, front view.
PDB entry 3nlc coloured by chain, side view.
PDB entry 3nlc coloured by chain, top view.
Source organism: Vibrio parahaemolyticus
Entry authors: Vorobiev S, Neely H, Seetharaman J, Wang D, Mao L, Xiao R, Acton TB, Montelione GT, Tong L, Hunt J, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183367 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
FAD-dependent protein C-terminal domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 549 amino acids
Theoretical weight: 60.88 KDa
Source organism: Vibrio parahaemolyticus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q87R42 (Residues: 1-539; Coverage: 100%)
Gene name: VP0956
Sequence domains: FAD-dependent protein, C-terminal domain-like
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand FAD 1 x FAD
1 modified residue:
Ligand MSE 13 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: P212121
Unit cell:
a: 69.079Å b: 78.166Å c: 101.875Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.218 0.215 0.271
Expression system: Escherichia coli BL21(DE3)

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