› 3s5t

X-ray diffraction
2.3Å resolution

Crystal structure of a member of duf3298 family (BF2082) from bacteroides fragilis nctc 9343 at 2.30 A resolution

Released:
DOI: 10.2210/pdb3s5t/pdb
PDB entry 3s5t coloured by chain, front view.
PDB entry 3s5t coloured by chain, side view.
PDB entry 3s5t coloured by chain, top view.
Source organism: Bacteroides fragilis NCTC 9343
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177474 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF3298 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 265 amino acids
Theoretical weight: 30.74 KDa
Source organism: Bacteroides fragilis NCTC 9343
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5LDM9 (Residues: 21-284; Coverage: 100%)
Gene names: BF9343_1998, NCTC9343_03658
Sequence domains:
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand PO4 2 x PO4
Ligand MPD 3 x MPD
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 11 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P6522
Unit cell:
a: 98.33Å b: 98.33Å c: 121.13Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.187 0.186 0.208
Expression system: Escherichia coli

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