› 3uxv

X-ray diffraction
1.56Å resolution

Crystal Structure of 7-cyano-7-deazaguanine reductase, QueF from Vibrio cholerae complexed with NADP and PreQ

Released:
DOI: 10.2210/pdb3uxv/pdb
PDB entry 3uxv coloured by chain, front view.
PDB entry 3uxv coloured by chain, side view.
PDB entry 3uxv coloured by chain, top view.
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Entry authors: Kim Y, Zhou M, Gu M, Anderson WF, Joachimiak A, Center for Structural Genomics of Infectious Diseases (CSGID)

Function and Biology Details

Reaction catalysed: 
7-aminomethyl-7-carbaguanine + 2 NADP(+) = 7-cyano-7-carbaguanine + 2 NADPH
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192092 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NADPH-dependent 7-cyano-7-deazaguanine reductase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 290 amino acids
Theoretical weight: 33.28 KDa
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9KTK0 (Residues: 1-281; Coverage: 100%)
Gene names: VC_0902, queF
Sequence domains:
Structure domains: GTP Cyclohydrolase I, domain 2

Ligands and Environments


Cofactor: Ligand NAP 2 x NAP
3 bound ligands:
Ligand EDO 2 x EDO
Ligand GOL 5 x GOL
Ligand GUN 2 x GUN
1 modified residue:
Ligand MSE 24 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P1
Unit cell:
a: 71.368Å b: 71.387Å c: 71.359Å
α: 109.89° β: 119.61° γ: 99.46°
R-values:
R R work R free
0.162 0.161 0.189
Expression system: Escherichia coli BL21

Quick links