3v11

X-ray diffraction
5Å resolution

Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-250380 (preferred)
Entry contents:
3 distinct polypeptide molecules
1 distinct RNA molecule
Macromolecules (4 distinct):
Translation initiation factor 2 subunit gamma Chain: A
Molecule details ›
Chain: A
Length: 414 amino acids
Theoretical weight: 45.72 KDa
Source organism: Saccharolobus solfataricus P2
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q980A5 (Residues: 2-415; Coverage: 100%)
Gene names: SSO0412, eif2g
Sequence domains:
Translation initiation factor 2 subunit alpha Chain: B
Molecule details ›
Chain: B
Length: 266 amino acids
Theoretical weight: 30.43 KDa
Source organism: Saccharolobus solfataricus P2
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q97Z79 (Residues: 1-266; Coverage: 100%)
Gene names: SSO1050, aif2a, eif2a
Sequence domains:
Translation initiation factor 2 subunit beta Chain: C
Molecule details ›
Chain: C
Length: 138 amino acids
Theoretical weight: 15.81 KDa
Source organism: Saccharolobus solfataricus P2
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q97W59 (Residues: 2-139; Coverage: 99%)
Gene names: SSO2381, aif2b, eif2b
Sequence domains: Domain found in IF2B/IF5
Initiator tRNA Chain: D
Molecule details ›
Chain: D
Length: 77 nucleotides
Theoretical weight: 24.83 KDa
Sequence domains: tRNA

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 1
Spacegroup: P3221
Unit cell:
a: 133Å b: 133Å c: 167.2Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.265 0.262 0.344
Expression system: Escherichia coli BL21