4c84

X-ray diffraction
1.6Å resolution

zebrafish ZNRF3 ectodomain crystal form I

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-107775 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase znrf3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 164 amino acids
Theoretical weight: 18.16 KDa
Source organism: Danio rerio
Expression system: Homo sapiens
UniProt:
  • Canonical: A5WWA0 (Residues: 30-181; Coverage: 18%)
Gene names: si:dkeyp-7c9.3, znrf3
Sequence domains: ZNRF-3 Ectodomain
Structure domains: Glucose Oxidase; domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P21
Unit cell:
a: 35.948Å b: 53.296Å c: 72.459Å
α: 90° β: 102.1° γ: 90°
R-values:
R R work R free
0.223 0.222 0.259
Expression system: Homo sapiens