4c8u

X-ray diffraction
3.01Å resolution

Xenopus ZNRF3 ectodomain crystal form II

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-170727 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase ZNRF3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 182 amino acids
Theoretical weight: 20.49 KDa
Source organism: Xenopus tropicalis
Expression system: Homo sapiens
UniProt:
  • Canonical: Q08D68 (Residues: 24-191; Coverage: 20%)
Gene name: znrf3
Sequence domains: ZNRF-3 Ectodomain
Structure domains: Glucose Oxidase; domain 1

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04
Spacegroup: P212121
Unit cell:
a: 58.388Å b: 67.41Å c: 75.682Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.284 0.281 0.351
Expression system: Homo sapiens