› 4dac

X-ray diffraction
2.1Å resolution

Crystal Structure of Computationally Designed Protein P6d

Released:
DOI: 10.2210/pdb4dac/pdb
PDB entry 4dac coloured by chain, front view.
PDB entry 4dac coloured by chain, side view.
PDB entry 4dac coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Computational design of a protein crystal.
Lanci CJ, MacDermaid CM, Kang SG, Acharya R, North B, Yang X, Qiu XJ, DeGrado WF, Saven JG
Proc Natl Acad Sci U S A 109 7304-9 (2012)
PMID: 22538812

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo trimer
Assembly name:
PDBe Complex ID:
PDB-CPX-164386 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Computationally designed crystal forming protein P6d Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 28 amino acids
Theoretical weight: 3.02 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P6
Unit cell:
a: 63.669Å b: 63.669Å c: 40.401Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.218 0.218 0.274
Expression system: Not provided

Quick links

Citations

21 review citations

De novo protein design, a retrospective.
Korendovych et al. (2020)
20 more

2 mentions without citation

Strategies to control the binding mode of de novo designed protein interactions.
Der et al. (2013)
1 more