› 4fuf

X-ray diffraction
2Å resolution

Crystal Structure of the Urokinase

Released:
DOI: 10.2210/pdb4fuf/pdb
PDB entry 4fuf coloured by chain, front view.
PDB entry 4fuf coloured by chain, side view.
PDB entry 4fuf coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Kang YN, Stuckey JA, Nienaber V, Giranda V

Function and Biology Details

Reaction catalysed: 
Specific cleavage of Arg-|-Val bond in plasminogen to form plasmin.
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-133249 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Urokinase-type plasminogen activator chain B Chain: A
Molecule details ›
Chain: A
Length: 246 amino acids
Theoretical weight: 27.72 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P00749 (Residues: 179-424; Coverage: 60%)
Gene name: PLAU
Sequence domains: Trypsin
Structure domains: Trypsin-like serine proteases

Ligands and Environments

5 bound ligands:
Ligand 8UP 1 x 8UP
Ligand SIN 1 x SIN
Ligand SO4 3 x SO4
Ligand GOL 4 x GOL
Ligand ACT 3 x ACT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P212121
Unit cell:
a: 55.1Å b: 52.4Å c: 80.25Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.159 0.157 0.202
Expression system: Escherichia coli

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