› 4gbu

X-ray diffraction
1.18Å resolution

OYE1-W116A in complex with aromatic product of S-carvone dismutation

Released:
DOI: 10.2210/pdb4gbu/pdb
PDB entry 4gbu coloured by chain, front view.
PDB entry 4gbu coloured by chain, side view.
PDB entry 4gbu coloured by chain, top view.
Source organism: Saccharomyces pastorianus
Primary publication:
X‑ray Crystallography Reveals How Subtle Changes Control the Orientation of Substrate Binding in an Alkene Reductase
Pompeu YA, Sullivan B, Stewart JD
ACS Catalysis 3 2376-2390 (2013)

Function and Biology Details

Reaction catalysed: 
NADPH + acceptor = NADP(+) + reduced acceptor
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169781 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NADPH dehydrogenase 1 Chain: A
Molecule details ›
Chain: A
Length: 400 amino acids
Theoretical weight: 44.96 KDa
Source organism: Saccharomyces pastorianus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q02899 (Residues: 1-400; Coverage: 100%)
Gene name: OYE1
Sequence domains: NADH:flavin oxidoreductase / NADH oxidase family
Structure domains: Aldolase class I

Ligands and Environments


Cofactor: Ligand FMN 1 x FMN
5 bound ligands:
Ligand MG 2 x MG
Ligand 0WV 1 x 0WV
Ligand CL 2 x CL
Ligand NA 5 x NA
Ligand 1PE 5 x 1PE
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X6A
Spacegroup: P43212
Unit cell:
a: 141.121Å b: 141.121Å c: 42.813Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.102 0.1 0.121
Expression system: Escherichia coli BL21(DE3)

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