› 4ipt

X-ray diffraction
1.55Å resolution

The crystal structure of a short-chain dehydrogenases/reductase (ethylated) from Veillonella parvula DSM 2008

Released:
DOI: 10.2210/pdb4ipt/pdb
Model geometry
Fit model/data
PDB entry 4ipt coloured by chain, front view.
PDB entry 4ipt coloured by chain, side view.
PDB entry 4ipt coloured by chain, top view.
Source organism: Veillonella parvula DSM 2008
Entry authors: Tan K, Hatzos-Skintges C, Clancy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-244136 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NAD-dependent epimerase/dehydratase Chain: A
Molecule details ›
Chain: A
Length: 221 amino acids
Theoretical weight: 25.08 KDa
Source organism: Veillonella parvula DSM 2008
Expression system: Escherichia coli BL21(DE3)
Structure domains: NAD(P)-binding Rossmann-like Domain

Ligands and Environments

5 bound ligands:
Ligand GOL 1 x GOL
Ligand CL 2 x CL
Ligand PEG 1 x PEG
Ligand FMT 2 x FMT
Ligand PG4 1 x PG4
2 modified residues:
Ligand MSE 5 x MSE
Ligand ELY 3 x ELY

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 51.681Å b: 60.758Å c: 68.769Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.188 0.187 0.22
Expression system: Escherichia coli BL21(DE3)

Quick links

PDB-REDO

The sliders below show the change in model quality between original PDB entry and the PDB-REDO entry

Model Geometry
 
 
Data not available
DNA/RNA Geometry
 
 
Data not available
Fit model/data
 
 
Data not available
PDB-REDO