› 4j0x

X-ray diffraction
2.5Å resolution

Structure of Rrp9

Released:
DOI: 10.2210/pdb4j0x/pdb
PDB entry 4j0x coloured by chain, front view.
PDB entry 4j0x coloured by chain, side view.
PDB entry 4j0x coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
Structural and functional analysis of the U3 snoRNA binding protein Rrp9.
Zhang L, Lin J, Ye K
RNA 19 701-11 (2013)
PMID: 23509373

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170357 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ribosomal RNA-processing protein 9 Chains: A, B
Molecule details ›
Chains: A, B
Length: 451 amino acids
Theoretical weight: 51.01 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q06506 (Residues: 127-573; Coverage: 78%)
Gene names: RRP9, YPR137W
Sequence domains: WD domain, G-beta repeat
Structure domains: YVTN repeat-like/Quinoprotein amine dehydrogenase

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P1
Unit cell:
a: 48.445Å b: 78.557Å c: 80.029Å
α: 61.77° β: 86.44° γ: 71.99°
R-values:
R R work R free
0.22 0.218 0.262
Expression system: Spodoptera frugiperda

Quick links

Citations

3 review citations

Ribosome assembly coming into focus.
Klinge et al. (2019)
2 more

2 mentions without citation

Structural and functional analysis of the U3 snoRNA binding protein Rrp9.
Zhang et al. (2013)
1 more