4kr0

X-ray diffraction
2.7Å resolution

Complex structure of MERS-CoV spike RBD bound to CD26

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-125456 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (4 distinct):
Dipeptidyl peptidase 4 Chain: A
Molecule details ›
Chain: A
Length: 739 amino acids
Theoretical weight: 85.78 KDa
Source organism: Homo sapiens
Expression system: Trichoplusia ni
UniProt:
  • Canonical: P27487 (Residues: 39-766; Coverage: 95%)
Gene names: ADCP2, CD26, DPP4
Sequence domains:
Structure domains:
Spike glycoprotein Chain: B
Molecule details ›
Chain: B
Length: 251 amino acids
Theoretical weight: 27.6 KDa
Source organism: Human betacoronavirus 2c EMC/2012
Expression system: Trichoplusia ni
UniProt:
  • Canonical: K0BRG7 (Residues: 367-606; Coverage: 18%)
Gene name: S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P6122
Unit cell:
a: 110.224Å b: 110.224Å c: 527.599Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.2 0.198 0.232
Expression system: Trichoplusia ni