› 4m7m

X-ray diffraction
2.57Å resolution

Crystal structure of the R111K:R132Q:Y134F:T54V:R59W:A32W mutant of the Cellular Retinoic Acid Binding Protein Type II in complex with All-Trans Retinal at 2.57 Angstrom Resolution

Released:
DOI: 10.2210/pdb4m7m/pdb
PDB entry 4m7m coloured by chain, front view.
PDB entry 4m7m coloured by chain, side view.
PDB entry 4m7m coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Rational design of a colorimetric pH sensor from a soluble retinoic acid chaperone.
Berbasova T, Nosrati M, Vasileiou C, Wang W, Lee KS, Yapici I, Geiger JH, Borhan B
J Am Chem Soc 135 16111-9 (2013)
PMID: 24059243

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-151430 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cellular retinoic acid-binding protein 2 Chain: A
Molecule details ›
Chain: A
Length: 137 amino acids
Theoretical weight: 15.65 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P29373 (Residues: 2-138; Coverage: 99%)
Gene name: CRABP2
Sequence domains: Lipocalin / cytosolic fatty-acid binding protein family
Structure domains: Lipocalin

Ligands and Environments

1 bound ligand:
Ligand RET 1 x RET
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-D
Spacegroup: P3121
Unit cell:
a: 56.457Å b: 56.457Å c: 109.775Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.205 0.203 0.253
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Cyanine polyene reactivity: scope and biomedical applications.
Gorka et al. (2015)
1 more

1 mention without citation

Rational design of a colorimetric pH sensor from a soluble retinoic acid chaperone.
Berbasova et al. (2013)