› 4mgu

X-ray diffraction
3.5Å resolution

Crystal structure of Acheta domesticus Densovirus

Released:
DOI: 10.2210/pdb4mgu/pdb
PDB entry 4mgu coloured by chain, front view.
PDB entry 4mgu coloured by chain, side view.
PDB entry 4mgu coloured by chain, top view.
Source organisms:
Primary publication:
The structure and host entry of an invertebrate parvovirus.
Meng G, Zhang X, Plevka P, Yu Q, Tijssen P, Rossmann MG
J Virol 87 12523-30 (2013)
PMID: 24027306

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 120-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-508745 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct DNA molecule
Macromolecules (2 distinct):
Structural protein VP2 Chain: A
Molecule details ›
Chain: A
Length: 428 amino acids
Theoretical weight: 46.85 KDa
Source organism: Acheta domestica densovirus
UniProt:
  • Canonical: F2Y986 (Residues: 169-597; Coverage: 72%)
Sequence domains: Capsid protein VP4
DNA (5'-D(P*TP*TP*T)-3') Chain: C
Molecule details ›
Chain: C
Length: 3 nucleotides
Theoretical weight: 868 Da
Source organism: Acheta domesticus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: P42212
Unit cell:
a: 415.469Å b: 415.469Å c: 281.93Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.29 0.29 0.29

Quick links

Citations

1 review citation

Deep Recombination: RNA and ssDNA Virus Genes in DNA Virus and Host Genomes.
Stedman KM. (2015)
5 other articles

6 mentions without citation

Twenty-Five Years of Structural Parvovirology.
Mietzsch et al. (2019)
5 more