› 5cai

X-ray diffraction
2.3Å resolution

Crystal structure of a putative lipoprotein from the DUF903 family (KPN_03160) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 2.30 A resolution

Released:
DOI: 10.2210/pdb5cai/pdb
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PDB entry 5cai coloured by chain, front view.
PDB entry 5cai coloured by chain, side view.
PDB entry 5cai coloured by chain, top view.
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108076 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lipoprotein YgdI/YgdR-like SH3-like domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 56 amino acids
Theoretical weight: 6.33 KDa
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Expression system: Escherichia coli
UniProt:
  • Canonical: A6TD90 (Residues: 22-76; Coverage: 100%)
Gene names: KPN_03160, ygdI
Sequence domains: Bacterial protein of unknown function (DUF903)
Structure domains: SH3 type barrels.

Ligands and Environments

1 bound ligand:
Ligand CL 9 x CL
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SSRL BEAMLINE BL14-1
Spacegroup: I4122
Unit cell:
a: 108.21Å b: 108.21Å c: 142.19Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.181 0.215
Expression system: Escherichia coli

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