5eoc

X-ray diffraction
1.98Å resolution

Crystal structure of Fab C2 in complex with a Cyclic variant of Hepatitis C Virus E2 epitope I

Released:

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Hydrolysis of four peptide bonds in the viral precursor polyprotein, commonly with Asp or Glu in the P6 position, Cys or Thr in P1 and Ser or Ala in P1'.
NTP + H(2)O = NDP + phosphate
ATP + H(2)O = ADP + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-219351 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
Fab fragment (Heavy chain) Chain: H
Molecule details ›
Chain: H
Length: 217 amino acids
Theoretical weight: 23.4 KDa
Source organism: Mus musculus
Structure domains: Immunoglobulins
Fab fragment (Light chain) Chains: L, M
Molecule details ›
Chains: L, M
Length: 216 amino acids
Theoretical weight: 23.81 KDa
Source organism: Mus musculus
Structure domains: Immunoglobulins
Fab fragment (Heavy chain) Chain: J
Molecule details ›
Chain: J
Length: 217 amino acids
Theoretical weight: 23.41 KDa
Source organism: Mus musculus
Structure domains: Immunoglobulins
Envelope glycoprotein E2 Chains: P, Q
Molecule details ›
Chains: P, Q
Length: 14 amino acids
Theoretical weight: 1.56 KDa
UniProt:
  • Canonical: P27958 (Residues: 412-422; Coverage: 0%)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: P1
Unit cell:
a: 54.972Å b: 56.191Å c: 77.153Å
α: 90.35° β: 90.18° γ: 94.98°
R-values:
R R work R free
0.234 0.234 0.266