› 1byj

Solution NMR

GENTAMICIN C1A A-SITE COMPLEX

Released:
DOI: 10.2210/pdb1byj/pdb
PDB entry 1byj coloured by chain, ensemble of 38 models, front view.
PDB entry 1byj coloured by chain, ensemble of 38 models, side view.
PDB entry 1byj coloured by chain, ensemble of 38 models, top view.
Source organism: Synthetic construct
Primary publication:
Structural origins of gentamicin antibiotic action.
Yoshizawa S, Fourmy D, Puglisi JD
EMBO J 17 6437-48 (1998)
PMID: 9822590

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195974 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (16S RNA) Chain: A
Molecule details ›
Chain: A
Length: 27 nucleotides
Theoretical weight: 8.66 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand GE1 1 x GE1
Ligand GE2 1 x GE2
Ligand GE3 1 x GE3
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Not provided

Quick links

Citations

25 review citations

Mechanisms of drug combinations: interaction and network perspectives.
Jia et al. (2009)
24 more

9 mentions without citation

Methods and Applications of In Silico Aptamer Design and Modeling.
Buglak et al. (2020)
8 more