› 1c2q

Solution NMR

SOLUTION STRUCTURE OF A DNA.RNA HYBRID CONTAINING AN ALPHAT-ANOMERIC THYMIDINE AND POLARITY REVERSALS

Released:
DOI: 10.2210/pdb1c2q/pdb
PDB entry 1c2q coloured by chain, front view.
PDB entry 1c2q coloured by chain, side view.
PDB entry 1c2q coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Solution structure of a DNA.RNA hybrid containing an alpha-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-alphaT-5'-5'-GCTC). r(gagcaccau).
Aramini JM, Germann MW
Biochemistry 38 15448-58 (1999)
PMID: 10569927

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-113523 (preferred)
Entry contents:
1 distinct DNA molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
5'-D(ATGG-3'-3'-(T3P)-5'-5'-GCTC)-3' Chain: A
Molecule details ›
Chain: A
Length: 9 nucleotides
Theoretical weight: 2.75 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-R(GAGCACCAU)-3' Chain: B
Molecule details ›
Chain: B
Length: 9 nucleotides
Theoretical weight: 2.85 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand T3P 1 x T3P

Experiments and Validation Details

Entry percentile scores
Refinement method: SIMULATED ANNEALING/MOLECULAR DYNAMICS
Expression system: Not provided

Quick links

Citations

2 review citations

From anionic to cationic alpha-anomeric oligodeoxynucleotides.
Morvan et al. (2010)
1 more