Ligands and environments ‹ 1w5e ‹ Protein Data Bank in Europe (PDBe)

1 bound ligand:

GTP 500(A) Environment details ›

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s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js

script 1 started

FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/1w5e.cif)

FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/1w5e.cif

The Resolver thinks MMCif

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TITLE: Structural Insights Into Ftsz Protofilament Formation

Setting space group name to HM:P 1

found biomolecule 1: A,J,S

found biomolecule 2: B,K,T

found biomolecule 3: C,L,U

found biomolecule 4: D,M,V

found biomolecule 5: E,N,W

found biomolecule 6: F,O,X

found biomolecule 7: G,P,Y

found biomolecule 8: H,Q,Z

found biomolecule 9: I,R,AA

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js

Time for openFile(*1w5e): 1889 ms

reading 23131 atoms

ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

23131 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

TITLE: Structural Insights Into Ftsz Protofilament Formation

found biomolecule 1: A,J,S

found biomolecule 2: B,K,T

found biomolecule 3: C,L,U

found biomolecule 4: D,M,V

found biomolecule 5: E,N,W

found biomolecule 6: F,O,X

found biomolecule 7: G,P,Y

found biomolecule 8: H,Q,Z

found biomolecule 9: I,R,AA

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptmath.z.js

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 48

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/jvxl/readers/IsoIntersectReader.js

Contacts: 21 with net volume 16.944878192345627 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

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script 3 started

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 48

Contacts: 23 with net volume 17.154907132193447 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

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script 4 started

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chainCaseSensitive = true

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autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 44

Contacts: 21 with net volume 15.320586749536943 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

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script 5 started

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 42

Contacts: 20 with net volume 17.122763545800204 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 6 started

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 40

Contacts: 21 with net volume 19.27385457927592 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

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script 7 started

antialiasDisplay = true

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debugScript = false

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 43

Contacts: 25 with net volume 14.572862551733968 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 8 started

antialiasDisplay = true

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showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

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forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 46

Contacts: 23 with net volume 14.54353702685366 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 9 started

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 46

Contacts: 20 with net volume 12.414506140357783 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 10 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 43

Contacts: 21 with net volume 10.631010590669286 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

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GTP 500(B) Environment details ›

GTP 500(C) Environment details ›

GTP 500(D) Environment details ›

GTP 500(E) Environment details ›

GTP 500(F) Environment details ›

GTP 500(G) Environment details ›

GTP 500(H) Environment details ›

GTP 500(I) Environment details ›

No modified residues

PDBe › 1w5e › Ligands and Environments

1 bound ligand:

Quick links

1w5e › Ligands and Environments