1 bound ligand:
23Y 101(A)
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(C) 2012 Jmol Development
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TITLE: 3D NMR structure of a complex between the amyloid beta peptide (1-40) and the polyphenol epsilon-viniferin glucoside: Implications in Alzheimer's disease.
found biomolecule 1: A,B,C
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: doub
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: doub
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
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unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: doub
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unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: doub
unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: doub
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
Time for openFile(*2m9s): 599 ms
reading 6768 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
9 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
6768 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.2 - 2M9S
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.3 - 2M9S
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.4 - 2M9S
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.5 - 2M9S
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.6 - 2M9S
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.7 - 2M9S
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.8 - 2M9S
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.9 - 2M9S
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
TITLE: 3D NMR structure of a complex between the amyloid beta peptide (1-40) and the polyphenol epsilon-viniferin glucoside: Implications in Alzheimer's disease.
found biomolecule 1: A,B,C
9 models
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptmath.z.js
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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;
Contact pairs: 0
Contacts: 0
Standard Hbond calculation
0 hydrogen bonds
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coretext.z.js
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script 3 started
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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;
Contact pairs: 10
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/jvxl/readers/IsoIntersectReader.js
Contacts: 3 with net volume 0.8182585741472577 A^3
Standard Hbond calculation
2 hydrogen bonds
Script completed
Jmol script terminated
script 4 started
Script completed
Jmol script terminated
23Y 102(A)
Environment details ›