› 2yj0

X-ray diffraction
2.4Å resolution

X-ray structure of chemically engineered Mycobacterium tuberculosis Dodecin

Released:
DOI: 10.2210/pdb2yj0/pdb
PDB entry 2yj0 coloured by chain, front view.
PDB entry 2yj0 coloured by chain, side view.
PDB entry 2yj0 coloured by chain, top view.
Source organism: Mycobacterium tuberculosis H37Rv
Primary publication:
Chemical engineering of Mycobacterium tuberculosis dodecin hybrids.
Vinzenz X, Grosse W, Linne U, Meissner B, Essen LO
Chem Commun (Camb) 47 11071-3 (2011)
PMID: 21897938

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dodecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-186598 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Dodecin family protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 69 amino acids
Theoretical weight: 7.51 KDa
Source organism: Mycobacterium tuberculosis H37Rv
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q8VK10 (Residues: 2-70; Coverage: 99%)
Gene name: MT1547
Sequence domains: Dodecin
Structure domains: Flavin-binding protein dodecin

Ligands and Environments

5 bound ligands:
Ligand 420 6 x 420
Ligand COA 6 x COA
Ligand FMN 6 x FMN
Ligand CL 3 x CL
Ligand SO4 2 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-2
Spacegroup: C2221
Unit cell:
a: 94Å b: 103.8Å c: 82.5Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.22 0.217 0.275
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 review citation

Trendspotting in the Protein Data Bank.
Berman et al. (2013)
2 other articles