› 3wjs

X-ray diffraction
3.3Å resolution

Crystal structure of GYE (old yellow enzyme)

Released:
DOI: 10.2210/pdb3wjs/pdb
PDB entry 3wjs coloured by chain, front view.
PDB entry 3wjs coloured by chain, side view.
PDB entry 3wjs coloured by chain, top view.
Source organism: Gluconobacter oxydans
Entry authors: Yuan YA, Yin B

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-106597 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NADH:flavin oxidoreductase/NADH oxidase N-terminal domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 361 amino acids
Theoretical weight: 39.29 KDa
Source organism: Gluconobacter oxydans
Expression system: Escherichia coli
UniProt:
  • Canonical: A1E8I9 (Residues: 1-361; Coverage: 100%)
Gene names: AD934_01855, AD950_09540, EDC20_102158, nox
Sequence domains: NADH:flavin oxidoreductase / NADH oxidase family
Structure domains: Aldolase class I

Ligands and Environments

3 bound ligands:
Ligand PGE 1 x PGE
Ligand PEG 1 x PEG
Ligand HG 1 x HG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P6122
Unit cell:
a: 138.886Å b: 138.886Å c: 145.091Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.177 0.174 0.245
Expression system: Escherichia coli

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