› 4aws

X-ray diffraction
1Å resolution

Crystal structure of the oxidized Shewanella Yellow Enzyme 1 (SYE1) M25L mutant

Released:
DOI: 10.2210/pdb4aws/pdb
PDB entry 4aws coloured by chain, front view.
PDB entry 4aws coloured by chain, side view.
PDB entry 4aws coloured by chain, top view.
Source organism: Shewanella oneidensis MR-1
Entry authors: Elegheert J, Brige A, Savvides SN

Function and Biology Details

Reaction catalysed: 
NADPH + acceptor = NADP(+) + reduced acceptor
Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-184367 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NADH:flavin oxidoreductase/NADH oxidase N-terminal domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 365 amino acids
Theoretical weight: 39.7 KDa
Source organism: Shewanella oneidensis MR-1
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q8EEC8 (Residues: 1-365; Coverage: 100%)
Gene names: SO_2454, sye1
Sequence domains: NADH:flavin oxidoreductase / NADH oxidase family
Structure domains: Aldolase class I

Ligands and Environments


Cofactor: Ligand FMN 1 x FMN
4 bound ligands:
Ligand SO4 1 x SO4
Ligand BOG 2 x BOG
Ligand 01F 1 x 01F
Ligand PE4 1 x PE4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P212121
Unit cell:
a: 48.56Å b: 83.9Å c: 87.76Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.116 not available 0.135
Expression system: Escherichia coli BL21(DE3)

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