› 4fms

X-ray diffraction
2.45Å resolution

Crystal structure of Pseudomonas aeruginosa OccK2 (OpdF) in complex with glucuronate

Released:
DOI: 10.2210/pdb4fms/pdb
PDB entry 4fms coloured by chain, front view.
PDB entry 4fms coloured by chain, side view.
PDB entry 4fms coloured by chain, top view.
Source organism: Pseudomonas aeruginosa PAO1
Primary publication:
Toward understanding the outer membrane uptake of small molecules by Pseudomonas aeruginosa.
Eren E, Parkin J, Adelanwa A, Cheneke B, Movileanu L, Khalid S, van den Berg B
J Biol Chem 288 12042-53 (2013)
PMID: 23467408

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-191467 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Probable porin Chains: A, B
Molecule details ›
Chains: A, B
Length: 397 amino acids
Theoretical weight: 43.77 KDa
Source organism: Pseudomonas aeruginosa PAO1
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9I6P8 (Residues: 25-421; Coverage: 100%)
Gene name: PA0240
Sequence domains: outer membrane porin, OprD family
Structure domains: Porin

Ligands and Environments

4 bound ligands:
Ligand BDP 2 x BDP
Ligand SO4 4 x SO4
Ligand C8E 7 x C8E
Ligand PGV 4 x PGV
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X6A
Spacegroup: P21
Unit cell:
a: 46.435Å b: 206.802Å c: 51.747Å
α: 90° β: 99.09° γ: 90°
R-values:
R R work R free
0.194 0.19 0.242
Expression system: Escherichia coli

Quick links

Citations

6 review citations

ESKAPEing the labyrinth of antibacterial discovery.
Tommasi et al. (2015)
5 more

2 mentions without citation

Metal Fluorides: Tools for Structural and Computational Analysis of Phosphoryl Transfer Enzymes.
Jin et al. (2017)
1 more